Computational workflows and tools

We develop computational workflows and tools to help us analyze multi-omics data and make sense of amplicon and genomic data. Click on the badges below to learn more about each of the workflows and tools.

HMPV IRMA module

A module for human metapneumovirus (HMPV) to be used with IRMA. The consensus sequences are derived from all whole genomes available on GenBank on October 18, 2024.

RSV amplicon sequencing

A protocol for RSV-A and RSV-B sequencing that consists of two pools of overlapping amplicons. It is designed to work with current Arctic SARS-CoV-2 protocols.

COVID-19 Sequence Assembly

An R-based workflow for assembling COVID-19 genome sequences from Nanopore or Illumina sequence data.

Sequencing bioinformatic pipelines

Scripts and reference files needed to make consensus sequences for Influenza, SARS-CoV-2, and RSV.