Papers

Here are all of the papers generated by the MIDGE Center along with PDF copies of the papers and links to preprint versions of the papers, the papers' Google Scholar page, GitHub repositories, and underlying data. If you click on the "Science" tab above, you will find a listing of the papers that have been published for each project within the Center.

Legend

  • PDF version of published paper
  • Preprint version of manuscript
  • GitHub repository for paper
  • Raw data used in manuscript
  • Google Scholar page
  1. Schloss PD. 2024. Preprint: Removal of rare amplicon sequence variants from 16S rRNA gene sequence surveys biases the interpretation of community structure data. DOI: 10.1101/2020.12.11.422279.
  2. Rifkin SB, Sze MA, Tuck K, Koeppe E, Stoffel EM, Schloss PD. 2024. Gut microbiome composition in Lynch Syndrome with and without history of colorectal neoplasia and non-Lynch controls. J Gastrointest Cancer. 55: 207-218. DOI: 10.1007/s12029-023-00925-4.
  3. Afiaz A, Ivanov A, Chamberlin J, Hanauer D, Savonen C, Goldman MJ, Morgan M, Reich M, Getka A, Holmes A, Pati S, Knight D, Boutros PC, Bakas S, Caporaso JG, Del Fiol G, Hochheiser H, Haas B, Schloss PD, Eddy JA, Albrecht J, Fedorov A, Waldron L, Hoffman AM, Bradshaw RL, Leek JT, Wright C. 2024. Best practices to evaluate the impact of biomedical research software-metric collection beyond citations. Bioinformatics. 40: btae469. DOI: 10.1093/bioinformatics/btae469.
  4. Schloss PD. 2024. Rarefaction is currently the best approach to control for uneven sequencing effort in amplicon sequence analyses. mSphere. DOI: 10.1128/msphere.00354-23.

The University of Michigan

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Pat Schloss © 2025